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Table 6 Comparison of HCV-GLUE subtype assignment with GenBank Metadata and assignment from ViPR

From: GLUE: a flexible software system for virus sequence data

Methods giving

Method agreement

Number of sequences

non-null assignment results

  

Metadata & HCV-GLUE & ViPR

Metadata = HCV-GLUE = ViPR

55 495

 

Metadata = HCV-GLUE ≠ ViPR

1389

 

Metadata ≠ HCV-GLUE = ViPR

1079

 

Metadata = ViPR ≠ HCV-GLUE

47

 

Metadata ≠ HCV-GLUE ≠ ViPR

4

 

Total

58 014

Metadata & HCV-GLUE

Metadata = HCV-GLUE

4508

 

Metadata ≠ HCV-GLUE

206

 

Total

4714

Metadata & ViPR

Metadata = ViPR

7

 

Metadata ≠ ViPR

13

 

Total

20

HCV-GLUE & ViPR

HCV-GLUE = ViPR

16 677

 

HCV-GLUE ≠ ViPR

1306

 

Total

17 983

Metadata only

Total

129

HCV-GLUE only

Total

1667

ViPR only

Total

18

All assignment results null

Total

383

 

Grand total

82 928

  1. A non-null subtype assignment implies a non-null genotype assignment