Table 2 Examples of GLUE commands with high-level functions
From: GLUE: a flexible software system for virus sequence data
Command | Description |
|---|---|
inherit feature-location | Creates a new FeatureLocation for a specific feature F on a ReferenceSequence R1 based on an existing nucleotide homology in the project between R1 and another ReferenceSequence R2 which already defines a FeatureLocation for F. |
show member feature-coverage | Calculates percentages for the nucleotide coverage of a specific FeatureLocation by AlignmentMembers within a given Alignment. |
amino-acid frequency | Computes the frequency of different amino acid residues within a specific FeatureLocation for a set of AlignmentMembers. |