From: GLUE: a flexible software system for virus sequence data
Resource name | Virus species | Functions | References |
---|---|---|---|
REGA Genotyping Tool | HIV, HCV and others | Genotyping, Recombination analysis | Alcantara et al., 2009 [1] |
The RNA Virus Database | Many viruses | Comparative analysis | Belshaw et al., 2009 [2] |
Stanford HIV Drug Resistance Database | HIV | Sequence repository, Sequence interpretation | Shafer et al., 2006 [3], Gifford et al., 2009 [4] Liu et al., 2006 [5] |
Global Initiative on Sharing All Influenza Data | Influenza | Sequence repository, Sequence interpretation, Visualisation | Shu and McCauley, 2017 [6] |
Influenza Research Database | Influenza | Sequence repository Sequence interpretation, Bioinformatics workbench | Squires et al., 2012 [7] |
Virus Pathogen Database and Analysis Resource | Many viruses | Sequence repository, Sequence interpretation, Bioinformatics workbench | Pickett et al., 2012 [8] |
Nextstrain | Influenza, Ebola, Zika and others | Molecular epidemiology, Visualisation | |
Geno2pheno[hcv] | HCV | Sequence interpretation | Kalaghatgi et al., 2016 [11] |
The Los Alamos hepatitis C sequence database | HCV | Sequence database | Kuiken et al., 2005 [12] |
The HIV Mutation Browser | HIV | Polymorphism database | Davey et al., 2014 [13] |