Panels | IMD_HYB | IMD_PCR | IMD_V1 | ||
Batches | 3 | 2 | Unknown | ||
Samples | 30a (cell line) | 36 (clinical) | 14 (cell line) | 20 (clinical) | 178 (clinical) |
Average depth of coverage | 174X | 345X | 301X | 349X | 87X |
Samples passing QC | 24 | 35 | 14 | 19 | 172 |
Failure rate | 20% | 2.8% | 0% | 5% | 3.4% |
Median number of raw duplications | 52.5 | 8 | 35.5 | 29 | 22.5 |
Median number of raw deletions | 22.5 | 3 | 37 | 23 | 9 |
Median number of raw CNVs | 82 | 13 | 85.5 | 67 | 34.5 |
Median number of 5-scoreb duplications | 4.5 | 1 | 12 | 5 | 6 |
Median number of 5-score deletions | 2 | 0 | 5.5 | 2 | 1 |
Median number of 5-score CNVs | 6.5 | 1 | 24.5 | 7 | 7.5 |