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Fig. 7 | BMC Bioinformatics

Fig. 7

From: Structure-function analysis of Sedolisins: evolution of tripeptidyl peptidase and endopeptidase subfamilies in fungi

Fig. 7

Interaction of SDP346, SDP343 and SDP89 at the interface between core and prosegment. Cartoons showing interaction in 3EE6 (a); SED_A (b); and SED_B (c). In 3EE6 K346 forms a salt bridge with E343. The different location of Helix 9 in SED_A appears to separate K407 and E404 which is compensated by F92 from the prosegment. In the SED_B model Q377 is folded internally and interacts with R381. Green cartoon corresponds with core whereas pink cartoon represents prosegment. The SDPs are represented in licorice element, while surf represents their 5 Å radius

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BMC Bioinformatics

ISSN: 1471-2105

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