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Table 10 Results of the programs on 100 extractions from the alignment of proteobacterial 16S rRNA

From: PQ, a new program for phylogeny reconstruction

Value

PQ

ME

ML

MP

QP

<D>

0.38

0.43

0.51

0.50

0.40

r DL

− 0.26

− 0.28

− 0.16

− 0.09

− 0.21

Good

27

21

9

12

24

Bad

14

25

45

41

18

PQ is better

NA

51

76

74

34

PQ is worse

NA

7

8

9

14

P-value

NA

2·10−9

5·10−15

8·10−14

0.01

  1. “Good” are numbers of inferred trees whose distance from the species tree is less than 0.25. “Bad” are numbers of inferred trees whose distance from the species tree is greater than 0.5. Other notations are the same as in Table 9
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BMC Bioinformatics

ISSN: 1471-2105

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