From: Cluster oligonucleotide signatures for rapid identification by sequencing
Data set | N | S | i | n | \(\bar {L} \pm \sigma (L)\) | n ∗ | c | c/n | n∗/n | s 0 | s s | s n | s c | δ c | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Anisogramma | 15248 | 28 | 26 | 54 | 545 | 94 | 33 | 139 | 2.6 | 61% | 1 | 4% | 24 | 86% | 27 | 96% | 28 | 100% | 4% |
Pectobacterium | 72624 | 37 | 42 | 79 | 1671 | 290 | 43 | 258 | 3.3 | 54% | - | - | 25 | 68% | 28 | 76% | 35 | 95% | 19% |
Ceratorhiza | 24645 | 37 | 35 | 72 | 647 | 60 | 36 | 137 | 1.9 | 50% | 7 | 19% | 24 | 65% | 25 | 68% | 34 | 92% | 24% |
Coniella | 23078 | 48 | 46 | 94 | 481 | 64 | 45 | 143 | 1.5 | 48% | 7 | 15% | 32 | 67% | 37 | 77% | 48 | 100% | 23% |
Talaromyces | 54964 | 88 | 86 | 174 | 625 | 220 | 126 | 626 | 3.6 | 72% | - | - | 87 | 99% | 88 | 100% | 88 | 100% | - |
Elsinoe | 79740 | 132 | 63 | 195 | 586 | 146 | 54 | 199 | 1.0 | 28% | 1 | 1% | 37 | 28% | 40 | 30% | 43 | 33% | 2% |
Claviceps | 77453 | 140 | 139 | 279 | 553 | 45 | 92 | 376 | 1.3 | 33% | 16 | 11% | 58 | 41% | 63 | 45% | 82 | 59% | 14% |
Ceratocystis | 112291 | 193 | 179 | 372 | 582 | 205 | 115 | 631 | 1.7 | 31% | 52 | 27% | 74 | 38% | 82 | 42% | 149 | 77% | 35% |
Phytophthora | 201815 | 253 | 238 | 491 | 798 | 24 | 319 | 1103 | 2.2 | 65% | - | - | 149 | 59% | 166 | 66% | 184 | 73% | 7% |
Diaporthe | 213202 | 399 | 338 | 737 | 530 | 99 | 196 | 1008 | 1.4 | 27% | 149 | 37% | 140 | 35% | 150 | 38% | 266 | 67% | 29% |
Peronospora | 428994 | 513 | 400 | 913 | 824 | 377 | 349 | 1984 | 2.2 | 38% | 64 | 12% | 200 | 39% | 222 | 43% | 310 | 60% | 17% |
Alternaria | 280418 | 551 | 550 | 1101 | 509 | 11 | 187 | 734 | 0.7 | 17% | - | - | 78 | 14% | 86 | 16% | 101 | 18% | 3% |
Aspergillus | 547127 | 1032 | 1032 | 2064 | 530 | 39 | 591 | 2331 | 1.1 | 29% | 19 | 2% | 285 | 28% | 313 | 30% | 414 | 40% | 10% |
Colletotrichum | 691867 | 1198 | 918 | 2116 | 576 | 297 | 477 | 2010 | 0.9 | 23% | 562 | 47% | 379 | 32% | 397 | 33% | 667 | 56% | 23% |
Tilletia | 743335 | 1200 | 915 | 2115 | 618 | 259 | 574 | 2666 | 1.3 | 27% | 394 | 33% | 376 | 31% | 403 | 34% | 649 | 54% | 20% |
Penicillium | 743954 | 1438 | 1437 | 2875 | 517 | 12 | 597 | 2675 | 0.9 | 21% | 57 | 4% | 310 | 22% | 325 | 23% | 413 | 29% | 6% |
Fusarium | 1604775 | 2946 | 2261 | 5207 | 533 | 133 | 1165 | 4417 | 0.8 | 22% | 1492 | 51% | 969 | 33% | 1001 | 34% | 1778 | 60% | 26% |