Skip to main content

Table 3 GO terms associated with each one of the CN Clusters

From: wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool

Cluster

# TFs

Genes

GO.ID

Term

  

correlated

  
  

to TFs

  

1

589

58

GO:0042775

mitochondrial ATP

    

synthesis coupled

   

GO:0010498

proteasomal protein

    

catabolic process

   

GO:0050890

cognition

   

GO:0033238

regulation of cellular

    

amine metabolic pathway

   

GO:0008090

retrograde axonal transport

   

GO:0070050

neuron cellular homeostasis

   

GO:0090168

Golgi reassembly

   

GO:0006099

tricarboxylic acid cycle

   

GO:0051443

positive regulation of

    

ubiquitin-protein

   

GO:0061418

regulation of transcription

    

from RNA polimerase

   

GO:0047496

vesicle transport along

    

microtubule

   

GO:0061640

cytoskeleton-dependent

    

cytokinesis

   

GO:0043488

regulation of mRNA stability

   

GO:0000086

G2/M transition of mitotic cell

    

cycle

   

GO:0038061

NIK/NF-kappaB signaling

   

GO:0000209

protein polyubiquitination

   

GO:0007052

mitotic spindle organization

   

GO:0031333

negative regulation of protein

    

complex

   

GO:0002223

stimulatory C-type lectin

    

receptor signal

   

GO:0016486

peptide hormone processing

   

GO:0034314

Arp2/3 complex-mediated

    

actin nucleation

   

GO:1900271

regulation of long-term

    

synaptic potential

   

GO:0000715

nucleotide-excision repair,

    

DNA damage

   

GO:1901983

regulation of protein acetylation

   

GO:0016082

synaptic vesicle priming

   

GO:0043243

positive regulation of protein

    

complex

   

GO:2000637

positive regulation of gene

    

silencing

   

GO:0021902

commitment of neuronal cell

   

GO:0051683

establishment of Golgi

    

localization

   

GO:0060013

righting reflex

   

GO:0061732

mitochondrial acetyl-CoA

    

biosynthetic pr...

2

647

77

GO:0035773

insulin secretion involved in

    

cellular

   

GO:0098930

axonal transport

   

GO:0000086

G2/M transition of mitotic cell

    

cycle

   

GO:0061640

cytoskeleton-dependent

    

cytokinesis

   

GO:0090083

regulation of inclusion body

    

assembly

   

GO:0034112

positive regulation of homotypic

   

GO:1902750

negative regulation of cell cycle

    

G2/M

   

GO:0031146

SCF-dependent proteasomal

    

ubiquitin-dependent

   

GO:0061003

positive regulation of dendritic

    

spine

   

GO:0032922

circadian regulation of gene

    

expression

   

GO:0072600

establishment of protein

    

localization

   

GO:0061077

chaperone-mediated protein

    

folding

   

GO:0016191

synaptic vesicle uncoating

   

GO:1902309

negative regulation of

    

peptidyl-serine

   

GO:0048024

regulation of mRNA splicing,

    

via spliceosome

   

GO:0016486

peptide hormone processing

   

GO:0048268

clathrin coat assembly

   

GO:0000209

protein polyubiquitination

   

GO:0035902

response to immobilization

    

stress

   

GO:2000757

negative regulation of

    

peptidyl-lysine

3

40

17

GO:0043687

post-translational protein

    

modification

   

GO:0050851

antigen receptor-mediated

    

signaling pathway

   

GO:0002479

antigen processing and

    

presentation

   

GO:0090199

regulation of release of

    

cytochrome c

   

GO:1905323

telomerase holoenzyme

    

complex assembly

   

GO:0050890

cognition

   

GO:0043248

proteasome assembly

   

GO:0030177

positive regulation of Wnt

   

GO:0030177

signaling pat...

   

GO:0047496

vesicle transport along

    

microtubule

   

GO:0042775

mitochondrial ATP synthesis

   

GO:0035773

insulin secretion involved in

    

cellular

   

GO:0045116

protein neddylation

   

GO:0090141

positive regulation of

    

mitochondrial

   

GO:0060071

Wnt signaling pathway,

    

planar cell

   

GO:0010635

regulation of mitochondrial

    

fusion

   

GO:0016579

protein deubiquitination

   

GO:0090090

negative regulation of canonical

    

Wnt signal

   

GO:0051131

chaperone-mediated protein

    

complex

   

GO:0051560

mitochondrial calcium ion

    

homeostasis

   

GO:0008090

retrograde axonal transport

   

GO:0032700

negative regulation of

    

interleukin-17

   

GO:0048170

positive regulation of

   

GO:0048170

long-term neuronal

   

GO:0051036

regulation of endosome size

   

GO:0061588

calcium activated phospholipid

   

GO:0090149

mitochondrial membrane fission

   

GO:0097112

gamma-aminobutyric acid

    

receptor

   

GO:0097332

response to antipsychotic drug

   

GO:0097338

response to clozapine

   

GO:1902683

regulation of receptor

    

localization

   

GO:0060052

neurofilament cytoskeleton

    

organization

   

GO:0048678

response to axon injury

4

677

39

GO:0007612

learning

   

GO:0000209

protein polyubiquitination

   

GO:0070646

protein modification by small

    

protein

   

GO:0035567

non-canonical Wnt signaling

    

pathway

   

GO:0038061

NIK/NF-kappaB signaling

   

GO:0090313

regulation of protein targeting

    

to membrane

   

GO:0016339

calcium-dependent cell-cell

    

adhesion

   

GO:0002223

stimulatory C-type lectin

    

receptor signal

   

GO:0043687

post-translational protein

    

modification

   

GO:0008090

retrograde axonal transport

   

GO:0061732

mitochondrial acetyl-CoA

    

biosynthetic

   

GO:0070050

neuron cellular homeostasis

   

GO:0016236

macroautophagy

   

GO:0043488

regulation of mRNA stability

   

GO:0061178

regulation of insulin secretion

    

involved...

   

GO:0016486

peptide hormone processing

   

GO:0035493

SNARE complex assembly

   

GO:0034112

positive regulation of homotypic

   

GO:1902260

negative regulation of delayed

    

rectifier...

   

GO:1902267

regulation of polyamine

    

transmembrane

   

GO:2000574

regulation of microtubule

    

motor activity

   

GO:0016082

synaptic vesicle priming

   

GO:0051560

mitochondrial calcium ion

    

homeostasis

   

GO:0006596

polyamine biosynthetic process

   

GO:0060052

neurofilament cytoskeleton

    

organization

   

GO:1903608

protein localization to

    

cytoplasmic stress

   

GO:0000715

nucleotide-excision repair,

    

DNA damage

   

GO:0047496

vesicle transport along

    

microtubule

   

GO:1990542

mitochondrial transmembrane

    

transport

   

GO:0031333

negative regulation of protein

    

complex

   

GO:0046826

negative regulation of protein

    

export

5

18

4

GO:0072369

regulation of lipid transport

   

GO:1901379

regulation of potassium ion

    

transmembrane

   

GO:0032700

negative regulation of

    

interleukin-17

   

GO:0051036

regulation of endosome size

   

GO:1904219

positive regulation of

    

CDP-diacylglycerol

   

GO:1904222

positive regulation of serine

    

C-palmitoyl

   

GO:1905664

regulation of calcium ion import

   

GO:2000286

receptor internalization

   

GO:0021769

orbitofrontal cortex

    

development

   

GO:0045716

positive regulation of

    

low-density lipo.

   

GO:0060430

lung saccule development

   

GO:0070885

negative regulation of

    

calcineurin-NFAT

   

GO:1900272

negative regulation of

    

long-term synaptic

   

GO:1902951

negative regulation of dendritic

    

spine