Method | wTO | WGCNA | ARACNe |
---|---|---|---|
Topological overlap | Yes | Yes | No |
Signed topological overlap | Optional | No | No |
Consensus topological overlap | Weighted sum | Minimum weight (strict) | No |
Pairwise p-values | Yes | No | Used to filter MI |
Network view | Native | Exported to Cytoscape | Exported to Cytoscape |
Soft thresholding | No | Optional (on by default) | No |
Correlation choices | Spearman, Pearson | Bicor, Pearson | Spearman, Pearson, Kendall |
Able to deal with time-series | Yes | No | No |