From: outbreaker2: a modular platform for outbreak reconstruction
Parameter
Value
Reference
Generation time in days (SD)
14.4 (8.9)
[1, 33, 34]
Time-to-collection in days (SD)
Assumed same as generation time
Basic reproduction number R0
1.8
[33]
Mutation rate (per site per day)
3.1 × 10− 6
[35,36,37]
Genome length (bases)
18,958
[35, 38]