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Fig. 4 | BMC Bioinformatics

Fig. 4

From: outbreaker2: a modular platform for outbreak reconstruction

Fig. 4

Similarity of consensus trees inferred by o2mod.TransPhylo and outbreaker2 compared to TransPhylo. The consensus tree of a reconstructed outbreak is defined as the tree with the ancestor of the highest posterior probability for each case. The similarity between consensus trees is calculated as the proportion of identically assigned ancestries. The x-axis indicates individual simulated outbreaks. Each outbreak was reconstructed once using the default outbreaker2 model (white dots), and once using o2mod.TransPhylo (black dots). The colour of the line represents the change in similarity to the consensus tree returned by the original TransPhylo package

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