From: De novo assembly of bacterial genomes with repetitive DNA regions by dnaasm application
Sequence len. [bp] | Motif len. [bp] | Unitigs | Scaffolds | ||||||
---|---|---|---|---|---|---|---|---|---|
ABySS | Velvet | SPAdes | dnaasm | ABySS | Velvet | SPAdes | dnaasm | ||
200 | 100 | 0/0/0 | 0/0/0 | 2/2/2 | 2/2/2 | 2/2/2 | 2/2/2 | 2/2/2 | 2/2/2 |
300 | 100 | 0/0/0 | 0/0/0 | 0/0/0 | 3/3/3 | 2/3/3 | 0/2/0 | 2/2/2 | 3/3/3 |
400 | 100 | 0/0/0 | 0/0/0 | 0/0/0 | 4/4/4 | 2/4/4 | 0/0/0 | 2/2/2 | 4/4/4 |
500 | 100 | 0/0/0 | 0/0/0 | 0/0/0 | 5/5/6 | 2/0/5 | 0/0/0 | 2/2/2 | 5/5/6 |
400 | 200 | 0/0/0 | 0/0/0 | 2/2/2 | 2/2/2 | 0/2/2 | 2/2/2 | 2/2/2 | 2/2/2 |
600 | 200 | 0/0/0 | 0/0/0 | 0/0/0 | 3/3/3 | 0/0/0 | 0/2/2 | 2/2/2 | 3/3/3 |
800 | 200 | 0/0/0 | 0/0/0 | 0/0/0 | 4/4/4 | 0/0/0 | 0/0/2 | 2/2/2 | 4/4/4 |
1000 | 200 | 0/0/0 | 0/0/0 | 0/0/0 | 5/5/6 | 0/0/0 | 0/0/0 | 2/2/2 | 5/5/6 |
600 | 300 | 0/0/0 | 0/0/0 | 2/2/2 | 2/2/2 | 0/2/2 | 0/2/2 | 2/2/2 | 2/2/2 |
900 | 300 | 0/0/0 | 0/0/0 | 0/0/0 | 3/3/3 | 0/0/2 | 0/0/2 | 2/2/2 | 3/3/3 |
1200 | 300 | 0/0/0 | 0/0/0 | 0/0/0 | 4/4/4 | 0/0/0 | 0/0/0 | 2/2/2 | 4/4/4 |
1500 | 300 | 0/0/0 | 0/0/0 | 0/0/0 | 5/5/5 | 0/0/0 | 0/0/0 | 2/2/2 | 5/5/5 |
800 | 400 | 0/0/0 | 0/0/0 | 2/2/2 | 2/2/2 | 0/2/0 | 0/2/2 | 2/2/2 | 2/2/2 |
1200 | 400 | 0/0/0 | 0/0/0 | 0/0/0 | 3/3/3 | 0/2/0 | 0/0/0 | 0/2/2 | 3/3/3 |
1600 | 400 | 0/0/0 | 0/0/0 | 0/0/0 | 4/4/4 | 0/2/0 | 0/0/0 | 0/2/2 | 4/4/4 |
2000 | 400 | 0/0/0 | 0/0/0 | 0/0/0 | 5/5/5 | 0/0/0 | 0/0/0 | 0/2/2 | 5/5/5 |
1000 | 500 | 0/0/0 | 0/0/0 | 2/2/2 | 2/2/2 | 0/2/2 | 0/2/2 | 2/2/2 | 2/2/2 |
1500 | 500 | 0/0/0 | 0/0/0 | 0/0/0 | 3/3/3 | 0/2/0 | 0/0/0 | 0/2/2 | 3/3/3 |
2000 | 500 | 0/0/0 | 0/0/0 | 0/0/0 | 4/4/4 | 0/2/0 | 0/0/0 | 0/2/2 | 4/4/4 |
2500 | 500 | 0/0/0 | 0/0/0 | 0/0/0 | 5/5/5 | 0/0/0 | 0/0/0 | 0/2/2 | 5/5/5 |