From: De novo assembly of bacterial genomes with repetitive DNA regions by dnaasm application
Sample | Type of output | With tandem repeats reconstruction | Without tandem repeats reconstruction | ||||
---|---|---|---|---|---|---|---|
No. of contigs | N50 [bp] | Max [bp] | No. of contigs | N50 [bp] | Max [bp] | ||
ERR351243 | unitigs | 84 | 30628 | 191880 | 93 | 27268 | 176501 |
scaffolds | 34 | 61265 | 333846 | 34 | 61265 | 333846 | |
SRR1981622 | unitigs | 73 | 45793 | 134195 | 82 | 33787 | 110992 |
scaffolds | 39 | 91627 | 228504 | 43 | 80288 | 206366 | |
SRR1981619 | unitigs | 77 | 43959 | 134261 | 81 | 36452 | 110995 |
scaffolds | 38 | 93136 | 256270 | 42 | 84434 | 205320 | |
SRR5431732 | unitigs | 416 | 16178 | 59383 | 450 | 14774 | 47710 |
scaffolds | 354 | 19644 | 120052 | 388 | 17344 | 120052 |