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Table 3 Running time and memory requirement

From: DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data

 

CPU (sec)

RAM (MB)

GATA1

DiNAMO

100

3400

MEMECHIP

1280

70

HOMER

18

555

Discrover

170

244

FIXED

DiNAMO

0.75

41

MEMECHIP

1.78

30

HOMER

0.88

120

Discrover

192

141

  1. The table on the left shows the GATA1 ChIP-seq dataset (14,351 sequences of length 100, scanning mode). The table on the right shows the synthetic dataset (5000 sequences, fixed position mode). These values were achieved on one CPU Intel Xeon 1,96GHZ
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BMC Bioinformatics

ISSN: 1471-2105

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