Fig. 5
From: ClustAGE: a tool for clustering and distribution analysis of bacterial accessory genomic elements
Genomic island variability. a Alignment of P. aeruginosa genomic islands PAGI-5, PAPI-1, and ExoU Island A. Dark bands and ORFs represent conserved nucleotide sequences. Figure reproduced from Battle et al. (https://0-doi-org.brum.beds.ac.uk/10.1128/JB.00785-08) [45] with permission from the American Society for Microbiology. b Graphical output from ClustAGE analysis of the same three genomic islands. Arrows in the top row correspond to coding sequences on the forward (orange) and reverse (green) strands of the bin representative PAPI-1. PAPI-1, as the longest of the three genomic island sequences, is shown in red in the next row. Alignments of PAGI-5 and exoU Island A against PAPI-1 are shown in blue. Percent sequence similarity of the alignments is represented by shade of blue according to the legend at right