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Table 8 Performance of RDb2C at residue level and strand level on the 5-fold cross-validation and shrunk BetaSheet916 set

From: Identification of residue pairing in interacting β-strands from a predicted residue contact map

Level

Stage

Cross-validation

BetaSheet916(858)

F1-score

Precision

Recall

F1-score

Residue Level

1st stage

71.70%

81.02%

71.01%

75.69%

2nd stage

72.18%

79.48%

73.47%

76.36%

3rd stage

71.89%

78.84%

73.67%

76.17%

Strand Level

1st stage

82.28%

93.96%

77.94%

85.20%

2nd stage

86.80%

95.40%

78.61%

86.20%

3rd stage

88.10%

95.59%

77.57%

85.65%

  1. Performances of the models with the window size of 5 are listed here as the representatives of the first-stage models. Winner in each category is highlighted in bold