Skip to main content

Table 10 Runtime comparison of the four calling programs using NA24149 WGS data as input

From: A study on fast calling variants from next-generation sequencing data using decision tree

 

Fuwa

Platypus

GATK-UG

GATK-HC

SAMtools

Time(min)

96.97

796

1434.6

3617.4

3025.68

RAM max(M)

1638.4

3174.4

4710.4

6656

284

RAM average(M)

1299.85

1217.72

1092.03

1935.76

192.67

CPU max(%)

100

100

257.2

1336.1

100

CPU average(%)

98.9

98.57

104.23

112.21

98.85