Category | Bioactive peptide identification tool | Input | In silico peptide digestion | Bioactive peptide prediction | Result of in silico peptide digestion/bioactive peptide prediction tool | Accessibility | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
Bioactivity | No. of known bioactive peptide sequence | ||||||||||
No. of protein per analysis | No. of Enzyme selection | No. of Miscleavage | Yes/No | Identification | Original protein track back | Resulting peptide categorized by enzyme | Protein-peptide alignment visualization by GBrowse | ||||
In silico peptide digestion tool | PeptideCutter tool | 1 protein | 1–29 | N/A | No | N/A | N/A | N/A | √ | N/A | |
Bioactive peptide prediction tool | PeptideLocator | 1 Uniprot ID (≤10,000 aa) | N/A | N/A | Yes | N/A | Unknown | N/A | N/A | N/A | http://bioware.ucd.ie/~compass/biowareweb/Server_pages/biopred.php |
PeptideRanker | Up to 150 peptides | N/A | N/A | Yes | N/A | Unknown | N/A | N/A | N/A | http://bioware.ucd.ie/~compass/biowareweb/Server_pages/peptideranker.php | |
In silico peptide digestion and bioactive peptide prediction tool | mMass | 1 protein | 1 | As user input | Yes | √ | 612 sequences | N/A | N/A | N/A | Standalone version (http://www.mmass.org/download/) |
BIOPEP | 1 protein | 1–3 | N/A | Yes | √ | 3587 sequences | N/A | N/A | N/A | ||
SpirPep (In this study) | Thousands proteins or the whole genome | 1–15 | 0–3 | Yes | √ | 28,892 sequences | √ | √ | √ |