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Table 3 Evaluation results for S. cerevisiae

From: Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data

Transcription factor

Genexpi

TD-ARACNE

Regulator

Random

Regulator

Random

FKH1

0.30

0.24

0.00

0.14

FKH2

0.37

0.22

0.45

0.08

MCM1

0.33

0.18

0.65

0.20

NDD1

0.42

0.21

0.00

0.00

ACE2

0.40

0.28

0.52

0.33

MBP1

0.13

0.21

0.39

0.05

SWI4

0.23

0.16

0.48

0.10

SWI6

0.10

0.20

0.00

0.04

  1. Results of Genexpi and TD-Aracne on the eukaryotic regulon reconstruction task. The “Regulator” column reports the proportion of predicted regulations by the true regulator, “Random” reports the proportion of predicted regulations by a random profile (averaged over 20 runs)
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BMC Bioinformatics

ISSN: 1471-2105

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