- Results of Genexpi and TD-Aracne on the regulon reconstruction task. The “Regulator” column reports the proportion of predicted regulations by the true regulator, “Random” reports the proportion of predicted regulations by a random profile (averaged over 50 runs). The best results for each algorithm are highlighted in bold. TD-Aracne (tested) are results of TD-Aracne only on those genes not removed by Genexpi in steps 3&4 of the workflow. The “tested” variant is not reported for the SigR regulon as the results are very similar to those on all genes. The DFs column contains the degrees of freedom for the spline, “#T” stands for “Number of genes tested by Genexpi”, “Reg.” for “Regulator” and “Rand.” for “Random”
