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Table 2 Similarity matrix of SNP data for evaluated individuals

From: TIA: algorithms for development of identity-linked SNP islands for analysis by massively parallel DNA sequencing

 

ID1

ID2

ID3

ID4

ID5

ID6

ID7

ID8

ID9

ID10

ID11

ID12

ID13

ID14

ID15

ID1

―

72

62

69

47

78

61

59

70

59

62

72

52

46

63

ID2

0.62

―

66

60

51

71

59

46

56

57

60

54

55

51

69

ID3

0.53

0.57

―

48

54

70

60

56

61

95

62

58

50

51

58

ID4

0.59

0.52

0.41

―

70

68

51

59

60

53

55

70

55

49

50

ID5

0.41

0.44

0.47

0.60

―

64

58

61

63

59

52

56

61

41

58

ID6

0.67

0.61

0.60

0.59

0.55

―

66

64

62

56

57

66

52

45

60

ID7

0.53

0.51

0.52

0.44

0.50

0.57

―

61

50

62

66

50

64

48

49

ID8

0.51

0.40

0.48

0.51

0.53

0.55

0.53

―

54

52

54

47

43

43

44

ID9

0.60

0.48

0.53

0.52

0.54

0.53

0.43

0.47

―

61

67

52

47

48

62

ID10

0.51

0.49

0.82

0.46

0.51

0.48

0.53

0.45

0.53

―

63

67

53

47

59

ID11

0.53

0.52

0.53

0.47

0.45

0.49

0.57

0.47

0.58

0.54

―

63

51

62

61

ID12

0.62

0.47

0.50

0.60

0.48

0.57

0.43

0.41

0.45

0.58

0.54

―

53

42

66

ID13

0.45

0.47

0.43

0.47

0.53

0.45

0.55

0.37

0.41

0.46

0.44

0.46

―

48

48

ID14

0.40

0.44

0.44

0.42

0.35

0.39

0.41

0.37

0.41

0.41

0.53

0.36

0.41

―

50

ID15

0.54

0.59

0.50

0.43

0.50

0.52

0.42

0.38

0.53

0.51

0.53

0.57

0.41

0.43

―

  1. Haplotype similarities of samples ID1-ID15 for each SNP location are represented beneath the diagonal, while the number of SNP haplotypes shared between pairs of samples are above the diagonal