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Table 2 ASTRAL-III-beta vs ASTRAL-III. Columns are defined similar to Table 1.

From: ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

Model

Contraction

FN

|X|

|Y|

Quartet

Running

condition

    

score

time

avian-0.5X-500bp

None

−0.003

−3%

−9%

−0.02%

−48%

avian-1X-250bp

None

−0.001

−3%

−9%

0.00%

−56%

avian-1X-500bp

None

−0.001

−2%

−6%

0.00%

−50%

avian-1X-1000bp

None

−0.001

−1%

−4%

0.00%

−58%

avian-1X-1500bp

None

0.001

−1%

−4%

0.00%

−57%

avian-2X-500bp

None

−0.002

−2%

−4%

0.00%

−65%

avian-0.5X-500bp

10%

−0.003

−3%

−29%

−0.01%

−69%

avian-1X-250bp

10%

−0.001

−50%

−40%

0.00%

−81%

avian-1X-500bp

10%

0.003

−18%

−62%

−0.01%

−62%

avian-1X-1000bp

10%

0.000

−5%

−8%

0.00%

−61%

avian-1X-1500bp

10%

0.003

0%

−1%

0.00%

−55%

avian-2X-500bp

10%

−0.002

−14%

−18%

0.00%

−62%

  1. Negative numbers indicate ASTRAL-III-beta has a larger value (i.e., has higher error, larger search space, better quartet scores, and is slower)