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Fig. 4 | BMC Bioinformatics

Fig. 4

From: nQuire: a statistical framework for ploidy estimation using next generation sequencing

Fig. 4

Clustering sets of samples into ploidy groups. Samples were clustered based on the normalized maximized log-likelihood of each fixed model representing each of the three ploidy levels. The clustering in three dimensions is shown with a set of three plots, one for each combination of ploidies. Shapes represent the manually assessed true ploidy levels, while colors show the assignments returned by the clustering algorithm. The agreement between the two is shown as a fraction. This analysis was conducted for samples before (a) and after denoising (b)

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