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Table 3 Summary of evaluation of five methods

From: A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip

 

Replicate

Standard

Type bias

DMPs

GO terms

Total

 

variation

deviation

    

SQN

1

1

1

0.5

0.5

4

SWAN

0.5

0.5

0.5

0.5

0.5

2.5

Dasen

1

1

0.5

0.5

0.5

3.5

BMIQ

0.5

0.5

1

1

1

4

RCP

1

1

1

1

1

5

  1. If there is significant change, score of the method is set to 1, otherwise the score is set to 0.5
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BMC Bioinformatics

ISSN: 1471-2105

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