From: Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction
Protein complex class | Receptor ligand | Bound unbound | No. features | kernel function | C | γ | d | r |
---|---|---|---|---|---|---|---|---|
A | r | b | 109 | sigmoid | 495.33 | 0.00054 | N/A | 1.44470 |
u | 96 | rbf | 1365.14 | 0.00039 | N/A | N/A | ||
l | b | 89 | linear | 46.05 | N/A | N/A | N/A | |
u | 85 | linear | 221.64 | N/A | N/A | N/A | ||
AB | r | b | 117 | poly | 23.87 | 0.03006 | 2 | 1.73464 |
u | 108 | poly | 426.47 | 0.01110 | 3 | 0.01539 | ||
l | b | 78 | poly | 2157.88 | 0.01906 | 7 | 0.17614 | |
u | 75 | poly | 4362.45 | 0.03470 | 10 | -0.03613 | ||
EI | r | b | 105 | poly | 1514.50 | 0.00003 | 3 | -0.15922 |
u | 129 | sigmoid | 33.32 | 0.00029 | N/A | -1.61953 | ||
l | b | 91 | sigmoid | 213.15 | 0.00065 | N/A | 0.47294 | |
u | 80 | poly | 1916.02 | 0.01531 | 4 | 0.13840 | ||
ER | r | b | 115 | rbf | 9.22 | 0.00366 | N/A | N/A |
u | 126 | rbf | 298.47 | 0.00222 | N/A | N/A | ||
l | b | 100 | sigmoid | 157.32 | 0.00024 | N/A | -0.24272 | |
u | 100 | poly | 1001.44 | 0.00597 | 5 | 0.00039 | ||
ES | r | b | 84 | linear | 196.85 | N/A | N/A | N/A |
u | 79 | linear | 7010.36 | N/A | N/A | N/A | ||
l | b | 83 | poly | 954.76 | 0.00581 | 6 | 1.00104 | |
u | 86 | poly | 721.43 | 0.02692 | 6 | 0.00022 | ||
OG | r | b | 102 | poly | 8543.28 | 0.01682 | 6 | 0.00004 |
u | 107 | rbf | 12.42 | 0.00062 | N/A | N/A | ||
l | b | 92 | poly | 257.51 | 0.00575 | 3 | -0.00191 | |
u | 78 | poly | 3421.90 | 0.01659 | 8 | 0.00014 | ||
OR | r | b | 97 | linear | 281.56 | N/A | N/A | N/A |
u | 68 | linear | 1804.59 | N/A | N/A | N/A | ||
l | b | 79 | poly | 5502.26 | 0.01908 | 9 | 0.00113 | |
u | 100 | sigmoid | 63.94 | 0.00261 | N/A | -1.90377 | ||
OX | r | b | 141 | rbf | 60.29 | 0.00029 | N/A | N/A |
u | 122 | rbf | 747.39 | 0.00006 | N/A | N/A | ||
l | b | 132 | poly | 383.62 | 0.02146 | 8 | 0.04259 | |
u | 118 | poly | 779.96 | 0.02933 | 9 | 0.05214 | ||
Generic model | b | 83 | sigmoid | 148.639 | 0.02312 | N/A | -1.44779 | |
u | 76 | sigmoid | 3218.238 | 0.00196 | N/A | 1.92731 |