Table 5 Simulation time for generation of 1000 triads
From: Simulating autosomal genotypes with realistic linkage disequilibrium and a spiked-in genetic effect
Number of SNPs | Number of chromosomes | Disease prevalence or QT | Time used (seconds) |
|---|---|---|---|
10,279 | 4 | 0.0002 | 159 |
10,279 | 4 | 0.00166 | 104 |
10,279 | 4 | 0.01 | 94 |
10,279 | 4 | 0.1 | 89 |
566,393 | 22 | 0.0002 | 2258 |
566,393 | 22 | 0.00166 | 2268 |
566,393 | 22 | 0.01 | 2190 |
566,393 | 22 | 0.1 | 2252 |
10,279 | 4 | QT | 92 |
566,393 | 22 | QT | 2223 |