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Table 3 WGS library data for six lines

From: A comparison of genotyping-by-sequencing analysis methods on low-coverage crop datasets shows advantages of a new workflow, GB-eaSy

 

Prize

LG12

Magellan

Maverick

Prohio

Skylla

Population of origin

Population 1

Population 2

Population 3

Population 3

Population 3

Population 3

Read length

100 bp

150 bp

150 bp

150 bp

150 bp

150 bp

Number of reads

130,404,160 (paired-end)

43,756,742 (paired-end)

12,880,066 (paired-end)

19,038,600 (paired-end)

34,177,159 (paired-end)

23,190,927 (paired-end)

Coverage (LN / G)

13.65

6.87

2.02

2.99

5.37

3.64

Percent of genome covered by at least 1 read

98.67

97.76

74.38

94.06

98.36

96.16

Percent of genome covered by at least 2 reads

98.31

97.04

73.03

85.18

97.27

90.36

  1. Prize and LG12 were also included in GBS Populations 1 and 2, respectively. Magellan, Maverick, Prohio and Skylla were included in GBS Population 3. Coverage was computed as the product of read length and number of reads, divided by genome size