Fig. 2

SNP overlap among 5 GBS pipelines. a shows overlap for the 3 populations. b shows overlap for 6 lines from those populations: Prize is from GBS Population 1, LG12 is from GBS Population 2, and the four remaining lines are from GBS Population 3. SNPs with a minimum read depth of 2 reads are shown. All SNPs were called relative to the Williams 82 reference genome