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Table 4 Correction power and accuracy of seven methods over E. coli dataset (4.6 Mb genome, 150 bp read length)

From: An efficient error correction algorithm using FM-index

 

Corrected bases (bp)

Corrected length (bp)

Identity (%)

Indel rate (10−5)

Raw data

229.94 Mbp

144.13

99.22%

1.90

Coral

231.09 Mbp

144.07

99.75%

1.37

Karect

236.90 Mbp

146.86

99.92%

0.76

FMOE

239.99 Mbp

149.46

99.85%

0.45

QuorUm

231.20 Mbp

143.77

99.97%

0.12

RACER

234.89 Mbp

145.99

99.94%

0.73

BLESS2

234.42 Mbp

143.75

99.92%

0.28

SGA

232.26 Mbp

144.14

99.81%

1.98