Table 2 Comparative results of the C2-BLASTP with other algorithms
From: Fast batch searching for protein homology based on compression and clustering
Query Seq | BLASTP | CaBLASTP | GHOSTZ | C2-BLASTP | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Â | Time (s) | Correct (%) | Alignment | Time (s) | Correct (%) | Alignment | Time (s) | Correct (%) | Alignment | Time (s) |
| Â | Â | Â | accuracy (%) | Â | Â | accuracy (%) | Â | Â | accuracy (%) | Â |
Single | 300.9 | 100 | 100 | 219.7 | 100 | 100 | 448.2 | 100 | 100 | 78.1 |
30 | 448.3 | 100 | 100 | 472.8 | 100 | 96.7 | 464.2 | 100 | 100 | 89.3 |
100 | 2271.9 | 100 | 100 | 1373.1 | 98.0 | 93.9 | 492.9 | 99.0 | 100 | 149.7 |
200 | 4167.4 | 100 | 100 | 2292.5 | 96.5 | 95.3 | 514.6 | 98.0 | 100 | 271.6 |
500 | 9028.2 | 99.2 | 100 | 5674.9 | 83.6 | 86.4 | 593.5 | 95.1 | 100 | 1551.4 |
1000 | 18016.2 | 99.0 | 100 | 11340.5 | 77.8 | 84.6 | 915.3 | 94.6 | 100 | 2562.1 |