Table 1 Comparison results using different compression threshold for the C2-BLASTP
From: Fast batch searching for protein homology based on compression and clustering
T t for query set | amino _acids | time (s) | TPR (%) | FPR (%) | AR | CR |
|---|---|---|---|---|---|---|
C2-BLASTP (40%) | 31572 | 180.9 | 94.3 | 0 | 16.6 | 0.59 |
C2-BLASTP (60%) | 36508 | 212.9 | 96.3 | 0 | 14.1 | 0.68 |
C2-BLASTP (80%) | 38549 | 229.2 | 96.5 | 0 | 13.1 | 0.71 |
C2-BLASTP (100%) | 53978 | 238.2 | 97.6 | 0 | 12.6 | 1.0 |
BLASTP | 53978 | 2994.4 | 100 | 0 | 1.0 | 1.0 |