| VISPA2 | VISPA | MAVRIC | SeqMap | QUICKMAP |
---|
TP | 440 | 422 | 357 | 294 | 436 |
FP | 0 | 0 | 50 | 1 | 11 |
FN | 15 | 33 | 48 | 160 | 8 |
- A dataset of 455 simulated IS generated previously [22] was used to test the performance of VISPA2 and other available IS mapping tools. In the confusion matrix used to assess precision and recall we defined: TP True Positives, number of IS correctly mapped into the genome (with a tolerance of 3 bp); FP False Positives, number of IS mapped in a wrong genomic location (>3 bp from the theoretical locus); FN False Negatives, number of discarded IS