Table 2 Benchmarking of Norgal and comparison with MITOBim and NOVOPlasty
From: Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
Norgal | MITOBim v1.9 | NOVOPlasty v2.6.2 | ||||
|---|---|---|---|---|---|---|
Organism | Identity to reference sequence | Input | Identity to reference sequence | Input | Identity to reference sequence | Input |
A. melanoleuca (Giant Panda) | 99.5% | Raw reads | 98.8% | Trimmed and interleaved reads, reference mitogenome (NC_009492.1) | 99.1% | Raw reads, insert size, read length, reference COI sequence (DQ093081.1) |
S. japonica (Japanese Seaweed) | 99.8% | Raw reads | 99.0% | Trimmed and interleaved reads, reference mitogenome (NC_013476.1) | 99.8% | Raw reads, mitogenome size range, insert size, read length, reference COI sequence (JN873222.1) |
P. glaucus (Swallowtail butterfly) | 99.8% | Raw reads | 98.5% | Trimmed and interleaved reads, reference mitogenome (KR822739.1) | 100.0% | Raw reads, insert size, read length, reference COI sequence (KT286455.1) |
A. niger | 98.7% | Raw reads | 97.8% | Trimmed and interleaved reads, reference mitogenome (NC_007445.1) | 98.9% | Raw reads, mitogenome size range, insert size, read length, reference COI sequence (EF180096.1) |
P. papatasi (Sand fly) | 98.5% | Raw reads | 99.0% | Trimmed and interleaved reads, reference mitogenome (NC_028042.1) | 99.9% | Raw reads, insert size, read length, reference COI sequence (KU659597.1) |