Skip to main content

Table 3 Comparison of run-times (sec) to analyze the Lister et al. [9] IMR90 samples, which had methylation counts at 21-25 million CpG sites

From: DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data

 

bsseq

BiSeq

DSS

DMRfinder

Clustering

–

17,367

–

556

Smoothing

18,151

563,738

–

–

Finding DMRs

187

297,501a

7,400

552

  1. abetaRegression() step only