Skip to main content

Table 1 Comparison of production of methylation counts with Bismark and DMRfinder

From: DMRfinder: efficiently identifying differentially methylated regions from MethylC-seq data

 

Bismark

DMRfinder

Run-time (sec)

22,514

9,378

Disk usage (Gb)

172.51

0.89

  1. The Bismark scripts ‘bismark_methylation_extractor’ and ‘coverage2cytosine’ and the DMRfinder script ‘extract_CpG_data.py’ were used to analyze the 335.2 million aligned reads of the Lister et al. [9] IMR90 replicate 1a samples