MVQTLCIM: composite interval mapping of multivariate traits in a hybrid F1 population of outbred species

BMC Bioinformatics

Table 2 Summary of the identified QTL position, LR, effect of QQ at each time point and the average heritability over the time points on the two parental linkage maps of P. deltoides and P. simonii

Linkage Map	QTL ID	Chr/LG^a	Marker Interval	Map Position (cM)	Genome Position^b(Mb)	Region Length^b(kb)	LR	T1^c	T2	T3	T4	T5	T6	Average Heritability (%)
P. deltoides	Q1D1	1	2	2.12	1.24	701	48.24	−5.83	−4.39	−5.34	−7.32	−8.89	−11.59	1.11
	Q2D1	1	145	346.67	31.30	332	39.11	27.01	30.86	35.04	34.92	36.87	38.24	22.13
	Q3D1	1	159	390.19	35.01	57	38.11	−10.24	−13.18	−15.49	−18.51	−20.04	−24.91	6.00
	Q1D2	2	99	244.74	20.86	739	38.14	−26.04	−24.07	−22.74	−22.00	−21.80	−21.26	10.14
	Q2D2	2	102	265.38	19.82	1799	46.40	−29.44	−28.21	−27.24	−26.36	−26.57	−26.78	14.40
	Q3D2	2	111	296.05	23.72	222	49.57	23.82	25.13	23.93	22.51	23.07	23.25	10.67
	QD5	5	3	20.13	2.24	844	46.32	−17.64	−19.79	−21.67	−22.95	−22.22	−23.74	8.78
	QD9	9	44	119.31	8.18	344	49.43	21.82	26.66	24.76	27.05	25.34	21.66	11.60
	Q1D14	14	1	16.01	1.37	1734	59.85	−33.74	−37.42	−38.52	−40.54	−38.65	−38.13	27.43
	Q2D14	14	12	39.12	3.10	529	41.03	22.96	26.29	29.36	30.96	28.58	29.43	15.03
P. simonii	QS7	7	28	149.75	15.28	1115	77.47	7.16	7.90	12.36	11.03	19.11	29.92	5.25
P. simonii	QS9	9	31	112.18	7.87	1200	77.59	11.91	14.76	19.68	19.57	25.60	35.70	9.74

^aChr, chromosome; LG, linkage group
^bEstimated by the flanking SNPs on the reference sequence of Populus trichocarpa v3.0
^cT1-T6 are the QTL effects of genotype QQ over six time point

ISSN: 1471-2105