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Fig. 4 | BMC Bioinformatics

Fig. 4

From: A fragment based method for modeling of protein segments into cryo-EM density maps

Fig. 4

FragFit examples. a A 12 residue long β-sheet from Ribosomal protein L28 (PDB 2XTG, template PDB 3FZL with 25% sequence identity). b TRPV1 ankyrin repeat region (PDB 3J5Q, template PDB 3EU9, sequence identity 23%). c Loop in GroEL connecting two β-sheets (PDB 3ZPZ, template PDB 3RTK with 26% sequence identity).d Long helix in TRPV1 (PDB 3J5Q,template PDB 3R2P with 19% sequence identity). Originally fitted structures are colored gray, fragments found by FragFit are colored orange

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