Skip to main content

Table 1 Tree edit distance and the number of overlaps when using k-th most similar structure as a template

From: TRAVeLer: a tool for template-based RNA secondary structure visualization

Ranking

TED

avg(stddev)

1

85.94

6.31 (7.60)

2

113.94

12.81 (19.08)

3

137.38

11.62 (19.58)

4

158.38

8.06 (12.92)

5

172.00

4.12 (7.59)

6

189.12

7.06 (12.68)

7

196.31

4.50 (7.62)

8

199.44

4.06 (6.73)

9

258.31

26.75 (23.06)

10

262.88

22.75 (23.27)

11

265.25

8.62 (15.74)

12

271.12

27.88 (27.07)

13

301.19

12.62 (8.28)

14

345.25

33.81 (17.30)

15

805.62

44.06 (18.92)

  1. Computed over all pairs of 18S rRNA structures from the metazoa kingdom available in CRW