Fig. 2
From: LSTrAP: efficiently combining RNA sequencing data into co-expression networks
TopHat’s % reads mapped and HTSeq-count’s (% of reads mapped onto coding genes) for Arabidopsis thaliana. Gray dots indicate samples included in the positive dataset, containing only Arabidopsis thaliana, poly(A) enriched samples. Other samples, generally considered un-suited for the construction of co-expression networks are indicated by other colors. Samples derived from related organisms are shown in yellow, while samples from pests infecting Arabidopsis thaliana are shown in green. Arabidopsis thaliana samples from DNA-seq derived samples are shown in purple while non-poly(A) enriched samples are shown in cyan (samples enriched for various types of non-coding RNA) or blue (whole RNA extracts). The exact mapping values are provided in Additional file 1: Table S1. LSTrAP by default warns users if samples with low mapping statistics are included (red areas in graph, HTSeq-Count <40% or TopHat <65%)