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Table 5 Summary of over-represented GO terms (molecular function) in each subset of E.coli data

From: Partitioning of functional gene expression data using principal points

Subset4

(339/402, 84%)

Transposition

26

3.10E-12

Category

(Annotated / Total, %)

Term

Count

p-value

Subset1

(932/1320, 70%)

DNA recombination

49

8.80E-06

RNA-binding

58

2.00E-04

Transposition

31

2.60E-04

Protein biosynthesis

26

3.60E-04

Transposable element

31

3.90E-04

tRNA-binding

16

7.90E-04

DNA-binding

159

1.70E-03

tRNA processing

26

2.90E-03

Nucleotide-binding

180

2.90E-03

ATP-binding

155

2.90E-03

Cytoplasm

232

4.30E-03

Nucleotidyltransferase

23

6.90E-03

Subset2

(188/248, 75%)

Acetylation

21

6.20E-07

Purine biosynthesis

9

2.10E-06

Oxidoreductase

43

6.10E-06

Nitrate assimilation

8

6.50E-05

Metal-binding

59

2.40E-04

Ligase

15

9.20E-04

Tricarboxylic acid cycle

7

1.40E-03

Pyridoxal phosphate

11

2.20E-03

NADP

14

2.30E-03

Pyrimidine biosynthesis

5

2.90E-03

Enterobactin biosynthesis

4

6.10E-03

Transferase

48

8.80E-03

Subset3

(609/1377, 44%)

Oxidoreductase

137

5.80E-03

Iron-sulfur

58

7.40E-03

Subset4

(339/402, 84%)

Transposition

26

3.10E-12

Transposable element

26

5.20E-12

DNA recombination

29

6.30E-09

Cytoplasm

96

2.80E-06

Ribonucleoprotein

16

2.00E-04

Bacterial flagellum

9

2.90E-04

Ribosomal protein

15

5.70E-04

Transmembrane beta strand

13

6.00E-04

RNA-binding

24

9.80E-04

DNA replication

12

1.20E-03

Cell outer membrane

18

2.30E-03

Ion transport

21

3.20E-03

Bacterial flagellum biogenesis

7

3.60E-03

rRNA processing

10

4.50E-03

Methyltransferase

13

7.40E-03