Table 1 Breakdown of tissues, assigned groups, abbreviations used, and sample sizes
From: Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data
Tissue | Abbreviation | Subtissue | Sample size |
|---|---|---|---|
Adipose subcutaneous | ADS | Adipose - Subcutaneous | 380 |
Adipose visceral | ADV | Adipose - Visceral (Omentum) | 234 |
Adrenal gland | ARG | Adrenal Gland | 159 |
Artery aorta | ATA | Artery - Aorta | 247 |
Artery coronary | ATC | Artery - Coronary | 140 |
Artery tibial | ATT | Artery - Tibial | 357 |
Brain other | BRO | Brain - Amygdala | 779 |
Brain - Anterior cingulate cortex (BA24) | |||
Brain - Cortex | |||
Brain - Frontal Cortex (BA9) | |||
Brain - Hippocampus | |||
Brain - Hypothalamus | |||
Brain - Spinal cord (cervical c-1) | |||
Brain - Substantia nigra | |||
Brain cerebellum | BRC | Brain - Cerebellar Hemisphere | 254 |
Brain - Cerebellum | |||
Brain basal ganglia | BRB | Brain - Caudate (basal ganglia) | 360 |
Brain - Nucleus accumbens (basal ganglia) | |||
Brain - Putamen (basal ganglia) | |||
Breast | BST | Breast - Mammary Tissue | 217 |
Lymphoblastoid cell line | LCL | Cells - EBV-transformed lymphocytes | 132 |
Fibroblast cell line | FIB | Cells - Transformed fibroblasts | 305 |
Colon sigmoid | CLS | Colon - Sigmoid | 173 |
Colon transverse | CLT | Colon - Transverse | 203 |
Gastroesophageal junction | GEJ | Esophagus - Gastroesophageal Junction | 176 |
Esophagus mucosa | EMC | Esophagus - Mucosa | 330 |
Esophagus muscularis | EMS | Esophagus - Muscularis | 283 |
Heart atrial appendage | HRA | Heart - Atrial Appendage | 217 |
Heart left ventricle | HRV | Heart - Left Ventricle | 267 |
Kidney cortex | KDN | Kidney Cortex | 36 |
Liver | LVR | Liver | 137 |
Lung | LNG | Lung | 360 |
Minor salivary gland | MSG | Minor Salivary Gland | 70 |
Skeletal muscle | SMU | Muscle - Skeletal | 469 |
Tibial nerve | TNV | Nerve - Tibial | 334 |
Ovary | OVR | Ovary | 108 |
Pancreas | PNC | Pancreas | 193 |
Pituitary | PIT | Pituitary | 124 |
Prostate | PRS | Prostate | 119 |
Skin | SKN | Skin - Not Sun Exposed (Suprapubic) | 661 |
Skin - Sun Exposed (Lower leg) | |||
Intestine terminal ileum | ITI | Small Intestine - Terminal Ileum | 104 |
Spleen | SPL | Spleen | 118 |
Stomach | STM | Stomach | 204 |
Testis | TST | Testis | 199 |
Thyroid | THY | Thyroid | 355 |
Uterus | UTR | Uterus | 90 |
Vagina | VGN | Vagina | 97 |
Whole blood | WBL | Whole Blood | 444 |