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Fig. 3 | BMC Bioinformatics

Fig. 3

From: VAliBS: a visual aligner for bisulfite sequences

Fig. 3

Example of error match by converting C to T. The positions marked with blue means methylated, because C in reads remain unchanged after bisulfite treatment. Positions marked with green means unmethylated. They converted to T after bisulfite treatment. Positions marked with red means false matching introduced after three-letter conversion. It should be a mismatch, because T can’t be converted to C

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