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Table 4 The running time of HMMER under different cutoffs and Short-Pair on a metagenomic dataset of synthetic communities

From: A sensitive short read homology search tool for paired-end read sequencing data

Case

HMMER,

HMMER,

HMMER,

Short-Pair

 

E-value 10

w/o filtration,

GA cutoff

 
  

E-value 10

  

Time (m)

3.18

1,377.15

3.41

40.25

  1. m: minutes. Note: The running time is the average running time of aligning 52,486,341 paired-end reads against one domain family
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BMC Bioinformatics

ISSN: 1471-2105

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