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Table 3 Assembly results of MegaGTA (using iterative de Bruijn graph) and Xander (merging contigs of three k-mer sizes)

From: MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs

 

MegaGTA (iterates on k = 30,36,45)

Xander (Union of k = 30,36,45)

# of gene contigs

10

19

# of genes recovered

10

10

duplication ratio

1

1.79

# misassembled contigs

0

1

# partially unaligned contigs

1

2

# mismatches per 100kbp

13.52

453.05

Time (second)

277

2927

The gene fraction of each recovered rplB genes (%)

Acinetobacter_baumannii

98.77

84.77

Bacteroides_vulgatus

82.48

82.48

Deinococcus_radiodurans

99.64

99.64

Escherichia_coli

81.39

81.39

Propionibacterium_acnes

78.14

78.14

Rhodobacter_sphaeroides

98.21

98.21

Staphylococcus_aureus

99.64

99.64

Staphylococcus_epidermidis

99.64

99.64

Streptococcus_mutans

99.29

99.29

Streptococcus_pneumoniae

63.31

62.23