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Table 1 Comparison of imputation scores using vanilla SNP2HLA vs our method: the results are quite similar

From: HLA-check: evaluating HLA data from SNP information

HLA (two-field)

Test population

D (ShapeIT/Impute2)

D (SNP2HLA)

HLA-A

865

97.6

97.1

HLA-B

1495

96

94.9

HLA-C

813

95.8

95.9

HLA-DRB1

800

87.9

87.8

HLA-DQB1

974

94.8

96.4

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BMC Bioinformatics

ISSN: 1471-2105

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