Table 2 Overlaps of deletion predictions of the four SV detection algorithms with golden standard deletions in Mills el. al. 2011
From: Pysim-sv: a package for simulating structural variation data with GC-biases
Software | Total reported deletion | Deletions in golden standard | Precision | Recall rate |
|---|---|---|---|---|
Delly | 1075 | 358/545 | 0.33 | 0.66 |
BreakDancer | 779 | 328/545 | 0.42 | 0.60 |
Gasv-pro | 1382 | 339/545 | 0.25 | 0.62 |
Meerkat | 687 | 372/545 | 0.54 | 0.68 |