From: SnoReport 2.0: new features and a refined Support Vector Machine to improve snoRNA identification
mfeC | MFE of the secondary structure with restrictions |
in RNAfold | |
A C,G U,GC | AC, GU and GC content |
zscore | zscore computed by RNAz |
Hscore | Score of the H box |
ACAscore | Score of the ACA box |
LseqSize | Number of nucleotides before the H box |
RseqSize | Number of nucleotides between H and ACA boxes |
LloopSC | Lenght of the loop, where we find the pocket region |
containing the target region, near to the H box | |
RloopSC | Length of the loop, where we find the pocket region |
containing the target region, more close to the | |
ACA box | |
LloopYC | Symmetry of the loop containing the pocket region |
near to the H box | |
RloopYC | Symmetry of the loop containing the pocket region |
near to the ACA box | |
LloopSym | Symmetry of all loops before H box |
RloopSym | Symmetry of all loops before ACA box |