Fig. 5

Structure propensity of genomic and transcriptomic regions. Intergenic regions, Intron, CDS, 5^′-UTR, and 3^′-UTR are represented by black, green, blue, orange, and pink, respectively. a Distributions of raw \(\bar {p}_{\text {stem}}(i)\) for each annotation category. b Distributions of normalized average stem probabilities \(\Delta \bar {p}_{\text {stem}}(i)\). c Log ratios of densities log(f _t (x)/f _Intergenic(x)), where f _t (x) is the probability density of \(\Delta \bar {p}_{\text {stem}}(i)\) at x for t=Intron,5^′-UTR,CDS,3^′-UTR. d is similar to (c), except that \(\Delta \bar {p}_{\text {stem}}(i)\) was computed for the true boundaries of pre-mRNAs