Fig. 3

Comparison of stem probabilities and PARS scores. a AUC scores describing the prediction of positions with high PARS scores (i.e., structured regions) by stem probabilities for ParasoR and other tools. b Distribution of PARS scores for accessible and structured regions with varying read-depth thresholds. Each position was classified into Accessible or Structured depending on the stem probability of ParasoR (p _stem<0.5 or p _stem>0.5) after filtering of the minimum read-depth. Outliers are excluded from each Tukey boxplot. c Comparison of the average stem probabilities of ParasoR and the median of filtered PARS scores among 5^′-UTR, CDS, and 3^′-UTR categories