Table 1 Overview of the matrices assessed in this study and their respective clustering values, relative entropies and corresponding scale in bits per unit
From: Addressing inaccuracies in BLOSUM computation improves homology search performance
Matrix | Clust. value | Rel. entropy | Bit units |
|---|---|---|---|
BLOSUM50 5.0 | 50 | 0.4808 | 1/3 |
RBLOSUM52 5.0 | 52 | 0.4918 | 1/3 |
CorBLOSUM49 5.0 | 49 | 0.4849 | 1/3 |
BLOSUM62 5.0 | 62 | 0.6979 | 1/2 |
RBLOSUM64 5.0 | 64 | 0.7003 | 1/2 |
CorBLOSUM61 5.0 | 61 | 0.6939 | 1/2 |
BLOSUM50 13+ | 50 | 0.2430 | 1/4 |
RBLOSUM59 13+ | 59 | 0.2410 | 1/4 |
CorBLOSUM57 13+ | 57 | 0.2479 | 1/4 |
BLOSUM62 13+ | 62 | 0.3672 | 1/3 |
RBLOSUM69 13+ | 69 | 0.3601 | 1/3 |
CorBLOSUM66 13+ | 66 | 0.3653 | 1/3 |
BLOSUM50 14.3 | 50 | 0.1509 | 1/5 |
RBLOSUM59 14.3 | 59 | 0.1477 | 1/5 |
CorBLOSUM57 14.3 | 57 | 0.1515 | 1/5 |
BLOSUM62 14.3 | 62 | 0.2685 | 1/4 |
RBLOSUM69 14.3 | 69 | 0.2662 | 1/4 |
CorBLOSUM67 14.3 | 67 | 0.2636 | 1/4 |